Seeking marine biology textbook recommendations

monicalooze · May 15, 2022

Does anyone have any marine biology textbook recommendations (not too advanced)?

I haven't had an ecology/zoology/biology class in ten years, and I want to review marine food webs to understand more about the relationships between carbon, bacteria, plants, and animals among the different trophic levels. I believe understanding these relationships will make me a better aquarist, especially because I am learning to keep NPS and sessile invertebrates. The more I know about food and bacteria, the better chances I have at keeping them longterm.

TIA

MnFish1 · May 15, 2022

I would suggest a couple things:

1. Get a basic marine biology textbook - recently published - there are numerous examples. Many universities with Marine biology courses list the texts that are required - and would probably be the most up to date
2. In addition to THAT get a book on the microbiology etc of JUST the reef aquarium. There are HUGE differences between the ecosystem / chemistry of an aquarium and the biology of a marine ecosystem. For your general knowlege this I s probably the most important part.

I'm not going to give a specific book for # 2 - as I would recommend getting more than one - so that you get more viewpoints (as there are multiple ways to keep a tank).

Good Luck - and welcome to R2R.

PS - Don't overanalyze;

monicalooze · May 15, 2022

Hi!

I'm actually not new to reef2reef - I just want to get my brain back into it.

Totally aware of the differences between oceans and reef aquaria. The biological processes would be the same to break down food eventually into inorganic nutrients, whether or not the bacteria are the exact same. That's what I'm interested in.

Plus I can't remember any of the names of anything...like I had to look up eutrophic yesterday because I forgot.

Thanks!

MnFish1 · May 15, 2022

monicalooze said:
Hi!

I'm actually not new to reef2reef - I just want to get my brain back into it.

Totally aware of the differences between oceans and reef aquaria. The biological processes would be the same to break down food eventually into inorganic nutrients, whether or not the bacteria are the exact same. That's what I'm interested in.

Plus I can't remember any of the names of anything...like I had to look up eutrophic yesterday because I forgot.

Thanks!

Still the same advice - if you merely google - you get books from 2007 or 2013. If you go to the actual classes being taught (hopefully) - they are using current textbooks. Anyway - good luck on your research - I should have said there are several articles on R2R - that are written by experts - and are concise. The reason I said 'don't overanalyze' - was because I was picturing you reading 10 marine biology books - when all the information is here already

.

ying yang · May 15, 2022

@Timfish often shares lots of interesting articles and sometimes gives the price of the books. Maybe he can point you in right direction.
Think I tagged correct person, let's see ha ha

ying yang · May 15, 2022

I was Wrong

I did the math. Here are my corrections for this month, and my daily doses. Corrections: Strontium: 11.05 ml for 1 day Boron: 8.99ml for 1 day Rubidium: 71.92ml for 2 days Barium: 45.10ml for 4 days Molybdenum: 17.88ml for 5 days Zinc: 1.20ml for 3 days Daily: Manganese: 1.44ml Chromium...

www.reef2reef.com

Yeah tagged correct person.look post 51 in this thread for lots if of interesting articles ( read them all few months back )

monicalooze · May 15, 2022

MnFish1 said:
Still the same advice - if you merely google - you get books from 2007 or 2013. If you go to the actual classes being taught (hopefully) - they are using current textbooks. Anyway - good luck on your research - I should have said there are several articles on R2R - that are written by experts - and are concise. The reason I said 'don't overanalyze' - was because I was picturing you reading 10 marine biology books - when all the information is here already.

Lol I promise I will still read 10 marine biology books. I am a researcher by nature. I've read a bunch of the articles, too.

Timfish · May 16, 2022

To save you time here's the list YinG Yang refferenced with a few additional links.

Some are in hte refferences in Rohwer's book and some are newer and some are for sponges by other researchers than De Goiej which ROhwer doesn't touch on much except reffereing to "filter feeders" I know all this is overwhelming. Keep in mind it's been collected over 10+ years. Also I'd point the maintenence I do on systems I've been taking care of up to 27 years is just basic water changes and watch alkalinity, calcium, magnesium, PO4 and nitrate. Or in a simpler term KISS!

"Coral Reefs in the Microbial Seas" This video compliments Rohwer's book of the same title (Paper back is ~$20, Kindle is ~$10), both deal with the conflicting roles of the different types of DOC in reef ecosystems. While there is overlap bewteen his book and the video both have information not covered by the other and together give a broader view of the complex relationships found in reef ecosystems

Changing Seas - Mysterious Microbes

Nitrogen cycling in hte coral holobiont

BActeria and Sponges

Maintenance of Coral Reef Health (refferences at the end)

Optical Feedback Loop in Colorful Coral Bleaching

Richard Ross What's up with phosphate"

FYI: DOC can be roughly seperated into three catagories, Labile, Semirefractory and Refractory. Most of the following papaers are looking mainly at Labile DOC. This will raise the hackles on some reefers but keep in mind Labile DOC and Carbon Dosing are synonamous. Jasper deGeoij's work shows cryptic sponges remove labile DOC about a thousand times faster than bacterioplankton. Included are links to some of the research showing what cryptic sponges are doing as well. Also, researchers tend to use DOM (Dissolved Organic Matter) and DOC (Dissolved Organic Carbon) interchangebly.

long-term stony coral survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia with an ATS was measured in days, not years. (See figure 3) (This page may have been removed, I can send you a copy of the .PDF if you're interested)

Something went wrong | Royal Burgers' Zoo

www.burgerszoo.com

Indirect effects of algae on coral: algae‐mediated, microbe‐induced coral mortality

Error - Cookies Turned Off

onlinelibrary.wiley.com

Influence of coral and algal exudates on microbially mediated reef metabolism.
Coral DOC improves oxygen (autotrophy), algae DOC reduces oxygen (heterotrophy).

Influence of coral and algal exudates on microbially mediated reef metabolism

Benthic primary producers in tropical reef ecosystems can alter biogeochemical cycling and microbial processes in the surrounding seawater. In order to quantify these influences, we measured rates of photosynthesis, respiration, and dissolved organic carbon (DOC) exudate release by the dominant...

peerj.com

Role of elevated organic carbon levels and microbial activity in coral mortality

http://www.int-res.com/articles/meps2006/314/m314p119.pdf

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity
Algae releases significantly more DOC into the water than coral.

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in...

journals.plos.org

Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species.
Starch and sugars (doc) caused coral death but not high nitrates, phosphates or ammonium.

http://www.int-res.com/articles/meps2005/294/m294p173.pdf

Visualization of oxygen distribution patterns caused by coral and algae

Planar optodes were used to visualize oxygen distribution patterns associated with a coral reef associated green algae (Chaetomorpha sp.) and a hermatypic coral (Favia sp.) separately, as standalone organisms, and placed in close proximity mimicking coral-algal interactions. Oxygen patterns were...

peerj.com

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates
Exposure to exudates derived from turf algae stimulated higher oxygen drawdown by the coral-associated bacteria.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

Algae-derived dissolved organic matter has been hypothesized to induce mortality of reef building corals. One proposed killing mechanism is a zone of hypoxia created by rapidly growing microbes. To investigate this hypothesis, biological oxygen demand ...

www.ncbi.nlm.nih.gov

Microbial ecology: Algae feed a shift on coral reefs

Microbial ecology: Algae feed a shift on coral reefs - Nature Microbiology

Human pressures on coral reefs are giving macroalgae a competitive advantage over reef-building corals. These algae support larger, and potentially pathogenic, microbial populations that are metabolically primed for less-efficient, yet faster, carbohydrate remineralization, perpetuating a...

www.nature.com

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages - PubMed

Increasing algal cover on tropical reefs worldwide may be maintained through feedbacks whereby algae outcompete coral by altering microbial activity. We hypothesized that algae and coral release compositionally distinct exudates that differentially alter bacterioplankton growth and community...

www.ncbi.nlm.nih.gov

Sugar enrichment provides evidence for a role of nitrogen fixation in coral bleaching

Error - Cookies Turned Off

onlinelibrary.wiley.com

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution
(here's an argument for maintaining heavy fish loads if you're carbon dosing)

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution

Labile dissolved organic carbon (DOC) is a major pollutant in coastal marine environments affected by anthropogenic impacts, and may significantly con…

www.sciencedirect.com

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton - The ISME Journal

Coastal pollution and algal cover are increasing on many coral reefs, resulting in higher dissolved organic carbon (DOC) concentrations. High DOC concentrations strongly affect microbial activity in reef waters and select for copiotrophic, often potentially virulent microbial populations. High...

www.nature.com

Unseen players shape benthic competition on coral reefs.

Unseen players shape benthic competition on coral reefs - PubMed

Recent work has shown that hydrophilic and hydrophobic organic matter (OM) from algae disrupts the function of the coral holobiont and promotes the invasion of opportunistic pathogens, leading to coral morbidity and mortality. Here we refer to these dynamics as the (3)DAM [dissolved organic...

www.ncbi.nlm.nih.gov

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance.

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance - PubMed

Diverse microbial communities associate with coral tissues and mucus, providing important protective and nutritional services, but once disturbed, the microbial equilibrium may shift from a beneficial state to one that is detrimental or pathogenic. Macroalgae (e.g., seaweeds) can physically and...

www.ncbi.nlm.nih.gov

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides.

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides - PubMed

With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the...

www.ncbi.nlm.nih.gov

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals.

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals - PubMed

Benthic macroalgae can be abundant on present-day coral reefs, especially where rates of herbivory are low and/or dissolved nutrients are high. This study investigated the impact of macroalgal extracts on both coral-associated bacterial assemblages and sublethal stress response of corals. Crude...

www.ncbi.nlm.nih.gov

Biophysical and physiological processes causing oxygen loss from coral reefs.

https://elifesciences.org/articles/49114.pdf

Global microbialization of coral reefs
DDAM Proven

Global microbialization of coral reefs - Nature Microbiology

Analysis of 60 sites in three ocean basins suggests that overgrowth of fleshy algae on coral reefs supports higher microbial abundances dominated by copiotrophic, potentially pathogenic bacteria via the provision of dissolved inorganic carbon.

www.nature.com

Coral Reef Microorganisms in a Changing Climate, Fig 3

Coral Reef Microorganisms in a Changing Climate

Coral reefs are one of the most diverse and productive ecosystems on the planet, yet they have suffered tremendous losses due to anthropogenic disturbances and are predicted to be one of the most adversely affected habitats under future climate change ...

www.ncbi.nlm.nih.gov

Ecosystem Microbiology of Coral Reefs: Linking Genomic, Metabolomic, and Biogeochemical Dynamics from Animal Symbioses to Reefscape Processes

https://msystems.asm.org/content/msys/3/2/e00162-17.full.pdf

Because sponges are essential players in the carbon, nitrogen and phosphorus cycle(s) on reefs here's some links to research done with them.

Element cycling on tropical coral reefs.
This is Jasper de Geoij's ground breaking research on reef sponge finding some species process labile DOC 1000X faster than bacterioplankton. (The introduction is in Dutch but the content is in English.)

https://www.rug.nl/research/portal/files/14555035/13completethesis.pdf

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Differential recycling of coral and algal dissolved organic matter via the sponge loop.
Sponges treat DOC from algae differently than DOC from corals

Error - Cookies Turned Off

besjournals.onlinelibrary.wiley.com

A Vicious Circle? Altered Carbon and Nutrient Cycling May Explain the Low Resilience of Caribbean Coral Reefs

A Vicious Circle? Altered Carbon and Nutrient Cycling May Explain the Low Resilience of Caribbean Coral Reefs

Coral reefs are economically important ecosystems that have suffered unprecedented losses of corals in the recent past. Why have Caribbean reefs in particu

academic.oup.com

Surviving in a Marine Desert The Sponge Loop Retains Resources Within Coral Reefs
Dissolved organic carbon and nitrogen are quickly processed by sponges and released back into the reef food web in hours as carbon and nitrogen rich detritus.

(PDF) 2013 deGoeij Science Sponge loop

PDF | On Jun 23, 2015, Jasper M de Goeij and others published 2013 deGoeij Science Sponge loop | Find, read and cite all the research you need on ResearchGate

www.researchgate.net

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Coral-excavating sponges are the most important bioeroders on Caribbean reefs and increase in abundance throughout the region. This increase is commonly attributed to a concomitant increase in food availability due to eutrophication and pollution. We ...

www.ncbi.nlm.nih.gov

The Role of Marine Sponges in Carbon and Nitrogen Cycles of COral Reefs and Nearshore Environments.

The role of marine sponges in carbon and nitrogen cycles of coral reef and nearshore environments - ProQuest

Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.

search.proquest.com

And since we're discussing favorable and not so favorable bacteria here's a paper looking at how different corals and polyps are influencing the bacteria in the water column.
Aura-biomes are present in the water layer above coral reef benthic macro-organisms

Aura-biomes are present in the water layer above coral reef benthic macro-organisms - PubMed

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in...

www.ncbi.nlm.nih.gov

Phosphorus and nitrogen stuff

An experimental mesocosm for long-term studies of reef corals | Journal of the Marine Biological Association of the United Kingdom | Cambridge Core

An experimental mesocosm for long-term studies of reef corals - Volume 92 Issue 4

www.cambridge.org

An Experimental Mesocosm for Longterm Studies of Reef Corals

Phosphate Deficiency:
Nutrient enrichment can increase the susceptibility of reef corals to bleaching:

Nutrient enrichment can increase the susceptibility of reef corals to bleaching - Nature Climate Change

Increased dissolved inorganic nitrogen (DIN) concentrations in sea water have been linked to a reduction of the temperature threshold at which corals bleach, however, the mechanism underlying this change is not known. This phenomenon is now explained in terms of increased phosphatase activities...

www.nature.com

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont:

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont

Reef building corals associated with symbiotic algae (zooxanthellae) can access environmental nutrients from different sources, most significantly via the uptake of dissolved inorganic nutrients by the algal symbiont and heterotrophic feeding of the coral host. Climate change is expected to...

www.frontiersin.org

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Enrichment of reef environments with dissolved inorganic nutrients is considered a major threat to the survival of corals living in symbiosis with din…

www.sciencedirect.com

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Phosphate contamination can negatively affect corals, modifying growth rates, skeletal density, reproduction, mortality, and zooxanthellae. We determi…

www.sciencedirect.com

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

SUMMARYSeveral untested aspects of the regulation of inorganic nutrient uptake were examined using nutrient depletion experiments with the symbiotic coral Stylophora pistillata. The total inhibition of phosphate uptake in artificial seawater lacking sodium indicates the involvement of a...

jeb.biologists.org

Phosphorus metabolism of reef organisms with algal symbionts

https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecm.1217?casa_token=ziDzrEEJ8g0AAAAA%3AHnfuGTIntMdqOtx2ij-lnoTh7qVg8VBhYFz98e60zfBEvx5IcIVGhmlpUYmzIJuqUNVm0sG8_0vth6lq

2657円まるいち博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

2657円まるいち博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

therichross.com

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Fig 4 from "Phosphorus metabolism of reef organisms with algal symbionts"

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals: Ingenta Connect

www.ingentaconnect.com

Amino acids a source of nitrogen for corals

Uptake of dissolved free amino acids by the scleractinian coral Stylophora pistillata

SUMMARY. This study was designed to assess the importance of dissolved free amino acids (DFAA) as a nitrogen source for the scleractinian coral Stylophora pistillata. For this purpose, experiments were performed using 15N-enriched DFAAs, and %15N enrichment was measured both in animal tissue and...

journals.biologists.com

Urea a source of nitrogen for corals

Urea uptake by the scleractinian coral Stylophora pistillata

Urea can be one of the major sources of nitrogen for phytoplankton, but little is known about its importance for corals. Experiments were therefore de…

www.sciencedirect.com

Diazotrpophs a source of nitrogen for corals

Diazotrophs: a non-negligible source of nitrogen for the tropical coral Stylophora pistillata - PubMed

Corals are mixotrophs: they are able to fix inorganic carbon through the activity of their symbiotic dinoflagellates and to gain nitrogen from predation on plankton and uptake of dissolved organic and inorganic nutrients. They also live in close association with diverse diazotrophic communities...

pubmed.ncbi.nlm.nih.gov

Context Dependant Effects of Nutrient Loading on the Coral-Algal Mutualism

Context-dependent effects of nutrient loading on the coral-algal mutualism | Request PDF

Request PDF | Context-dependent effects of nutrient loading on the coral-algal mutualism | Human-mediated increases in nutrient availability alter patterns of primary production, impact species diversity, and threaten ecosystem function.... | Find, read and cite all the research you need on...

www.researchgate.net

Fig 3 from COntext Dependant Effects

Context‐dependent effects of nutrient loading on the coral–algal mutualism(1).png

Feldman's research on aquarium stuff

Granular Activated Carbon Pt 1

Granular Activated Carbon, Part 1: Modeling of Operational Parameters for Dissolved Organic Carbon Removal from Marine Aquaria

Chemistry Department, The Pennsylvania State University. In this first part of a two part series, the authors will introduce granular activated carbon and explain the experimental goals and mathematical models used in their research.

www.advancedaquarist.com

Granular Activated Carbon Pt 2

Granular Activated Carbon, Part 2: Modeling of Operational Parameters for Dissolved Organic Carbon Removal from Marine Aquaria

Chemistry Department, The Pennsylvania State University. In Part 2, the authors will discuss the results of their research and make some recommendations to the aquarist on its usage.

www.advancedaquarist.com

Total Organic Carbon Pt 1

Total Organic Carbon (TOC) and the Reef Aquarium: an Initial Survey, Part I

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Ken and Kelly report on their work on Total Organic Carbon and how it relates to the reef aquarium.

www.advancedaquarist.com

Total Organic Carbon Pt 2

Total Organic Carbon (TOC) and the Reef Aquarium: an Initial Survey, Part II

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Ken and Kelly continue to report on their work on Total Organic Carbon and how it relates to the reef aquarium.

www.advancedaquarist.com

Protein Skimmer Performance, Pt 1

The Development of a Method for the Quantitative Evaluation of Protein Skimmer Performance

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Protein skimmers have become indispensable for many aquarists who strive to maintain the high water quality necessary to keep stony corals.

reefs.com

Protein Skimmer Performance, Pt 2

Further Studies on Protein Skimmer Performance

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Many factors contribute to the 'value' of a skimmer to an aquarist, including quality of construction, size, footprint, noise level, ease of cleaning, energy efficiency of the pump, and of course, the ability...

reefs.com

Elemental Analysis of Skimmate

Elemental Analysis of Skimmate: What Does a Protein Skimmer Actually Remove from Aquarium Water?

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. The chemical/elemental composition of skimmate generated by an H&S 200-1260 skimmer on a 175-gallon reef tank over the course of several days or a week had some surprises.

reefs.com

Bacterial Counts in Reef Aquarium Water

Bacterial Counts in Reef Aquarium Water: Baseline Values and Modulation by Carbon Dosing, Protein Skimming, and Granular Activated Carbon Filtration

What are the bacteria populations in the water column of reef tanks, and how does that value compare with bacterial counts in authentic reef water? Does carbon dosing indeed increase water column bacteria populations (i.e., is growth carbon limited)? Does mechanical filtration (protein skimming...

reefs.com

MnFish1 · May 16, 2022

Timfish said:
To save you time here's the list YinG Yang refferenced with a few additional links. Some are in hte refferences in Rohwer's book and some are newer and some are for sponges by other researchers than De Goiej which ROhwer doesn't touch on much except reffereing to "filter feeders" I know all this is overwhelming. Keep in mind it's been collected over 10+ years. Also I'd point the maintenence I do on systems I've been taking care of up to 27 years is just basic water changes and watch alkalinity, calcium, magnesium, PO4 and nitrate. Or in a simpler term KISS!

"Coral Reefs in the Microbial Seas" This video compliments Rohwer's book of the same title (Paper back is ~$20, Kindle is ~$10), both deal with the conflicting roles of the different types of DOC in reef ecosystems. While there is overlap bewteen his book and the video both have information not covered by the other and together give a broader view of the complex relationships found in reef ecosystems

Changing Seas - Mysterious Microbes

Nitrogen cycling in hte coral holobiont

BActeria and Sponges

Maintenance of Coral Reef Health (refferences at the end)

Optical Feedback Loop in Colorful Coral Bleaching

Richard Ross What's up with phosphate"

FYI: DOC can be roughly seperated into three catagories, Labile, Semirefractory and Refractory. Most of the following papaers are looking mainly at Labile DOC. This will raise the hackles on some reefers but keep in mind Labile DOC and Carbon Dosing are synonamous. Jasper deGeoij's work shows cryptic sponges remove labile DOC about a thousand times faster than bacterioplankton. Included are links to some of the research showing what cryptic sponges are doing as well. Also, researchers tend to use DOM (Dissolved Organic Matter) and DOC (Dissolved Organic Carbon) interchangebly.

long-term stony coral survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia with an ATS was measured in days, not years. (See figure 3) (This page may have been removed, I can send you a copy of the .PDF if you're interested)

Something went wrong | Royal Burgers' Zoo

www.burgerszoo.com

Indirect effects of algae on coral: algae‐mediated, microbe‐induced coral mortality

Error - Cookies Turned Off

onlinelibrary.wiley.com

Influence of coral and algal exudates on microbially mediated reef metabolism.
Coral DOC improves oxygen (autotrophy), algae DOC reduces oxygen (heterotrophy).

Influence of coral and algal exudates on microbially mediated reef metabolism

Benthic primary producers in tropical reef ecosystems can alter biogeochemical cycling and microbial processes in the surrounding seawater. In order to quantify these influences, we measured rates of photosynthesis, respiration, and dissolved organic carbon (DOC) exudate release by the dominant...

peerj.com

Role of elevated organic carbon levels and microbial activity in coral mortality

http://www.int-res.com/articles/meps2006/314/m314p119.pdf

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity
Algae releases significantly more DOC into the water than coral.

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in...

journals.plos.org

Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species.
Starch and sugars (doc) caused coral death but not high nitrates, phosphates or ammonium.

http://www.int-res.com/articles/meps2005/294/m294p173.pdf

Visualization of oxygen distribution patterns caused by coral and algae

Visualization of oxygen distribution patterns caused by coral and algae

Planar optodes were used to visualize oxygen distribution patterns associated with a coral reef associated green algae (Chaetomorpha sp.) and a hermatypic coral (Favia sp.) separately, as standalone organisms, and placed in close proximity mimicking coral-algal interactions. Oxygen patterns were...

peerj.com

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates
Exposure to exudates derived from turf algae stimulated higher oxygen drawdown by the coral-associated bacteria.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

Algae-derived dissolved organic matter has been hypothesized to induce mortality of reef building corals. One proposed killing mechanism is a zone of hypoxia created by rapidly growing microbes. To investigate this hypothesis, biological oxygen demand ...

www.ncbi.nlm.nih.gov

Microbial ecology: Algae feed a shift on coral reefs

Microbial ecology: Algae feed a shift on coral reefs - Nature Microbiology

Human pressures on coral reefs are giving macroalgae a competitive advantage over reef-building corals. These algae support larger, and potentially pathogenic, microbial populations that are metabolically primed for less-efficient, yet faster, carbohydrate remineralization, perpetuating a...

www.nature.com

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages - PubMed

Increasing algal cover on tropical reefs worldwide may be maintained through feedbacks whereby algae outcompete coral by altering microbial activity. We hypothesized that algae and coral release compositionally distinct exudates that differentially alter bacterioplankton growth and community...

www.ncbi.nlm.nih.gov

Sugar enrichment provides evidence for a role of nitrogen fixation in coral bleaching

Error - Cookies Turned Off

onlinelibrary.wiley.com

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution
(here's an argument for maintaining heavy fish loads if you're carbon dosing)

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution

Labile dissolved organic carbon (DOC) is a major pollutant in coastal marine environments affected by anthropogenic impacts, and may significantly con…

www.sciencedirect.com

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton - The ISME Journal

Coastal pollution and algal cover are increasing on many coral reefs, resulting in higher dissolved organic carbon (DOC) concentrations. High DOC concentrations strongly affect microbial activity in reef waters and select for copiotrophic, often potentially virulent microbial populations. High...

www.nature.com

Unseen players shape benthic competition on coral reefs.

Unseen players shape benthic competition on coral reefs - PubMed

Recent work has shown that hydrophilic and hydrophobic organic matter (OM) from algae disrupts the function of the coral holobiont and promotes the invasion of opportunistic pathogens, leading to coral morbidity and mortality. Here we refer to these dynamics as the (3)DAM [dissolved organic...

www.ncbi.nlm.nih.gov

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance.

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance - PubMed

Diverse microbial communities associate with coral tissues and mucus, providing important protective and nutritional services, but once disturbed, the microbial equilibrium may shift from a beneficial state to one that is detrimental or pathogenic. Macroalgae (e.g., seaweeds) can physically and...

www.ncbi.nlm.nih.gov

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides.

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides - PubMed

With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the...

www.ncbi.nlm.nih.gov

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals.

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals - PubMed

Benthic macroalgae can be abundant on present-day coral reefs, especially where rates of herbivory are low and/or dissolved nutrients are high. This study investigated the impact of macroalgal extracts on both coral-associated bacterial assemblages and sublethal stress response of corals. Crude...

www.ncbi.nlm.nih.gov

Biophysical and physiological processes causing oxygen loss from coral reefs.

https://elifesciences.org/articles/49114.pdf

Global microbialization of coral reefs
DDAM Proven

Global microbialization of coral reefs - Nature Microbiology

Analysis of 60 sites in three ocean basins suggests that overgrowth of fleshy algae on coral reefs supports higher microbial abundances dominated by copiotrophic, potentially pathogenic bacteria via the provision of dissolved inorganic carbon.

www.nature.com

Coral Reef Microorganisms in a Changing Climate, Fig 3

Coral Reef Microorganisms in a Changing Climate

Coral reefs are one of the most diverse and productive ecosystems on the planet, yet they have suffered tremendous losses due to anthropogenic disturbances and are predicted to be one of the most adversely affected habitats under future climate change ...

www.ncbi.nlm.nih.gov

Ecosystem Microbiology of Coral Reefs: Linking Genomic, Metabolomic, and Biogeochemical Dynamics from Animal Symbioses to Reefscape Processes

https://msystems.asm.org/content/msys/3/2/e00162-17.full.pdf

Because sponges are essential players in the carbon, nitrogen and phosphorus cycle(s) on reefs here's some links to research done with them.

Element cycling on tropical coral reefs.
This is Jasper de Geoij's ground breaking research on reef sponge finding some species process labile DOC 1000X faster than bacterioplankton. (The introduction is in Dutch but the content is in English.)

https://www.rug.nl/research/portal/files/14555035/13completethesis.pdf

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Differential recycling of coral and algal dissolved organic matter via the sponge loop.
Sponges treat DOC from algae differently than DOC from corals

Error - Cookies Turned Off

besjournals.onlinelibrary.wiley.com

A Vicious Circle? Altered Carbon and Nutrient Cycling May Explain the Low Resilience of Caribbean Coral Reefs

A Vicious Circle? Altered Carbon and Nutrient Cycling May Explain the Low Resilience of Caribbean Coral Reefs

Coral reefs are economically important ecosystems that have suffered unprecedented losses of corals in the recent past. Why have Caribbean reefs in particu

academic.oup.com

Surviving in a Marine Desert The Sponge Loop Retains Resources Within Coral Reefs
Dissolved organic carbon and nitrogen are quickly processed by sponges and released back into the reef food web in hours as carbon and nitrogen rich detritus.

(PDF) 2013 deGoeij Science Sponge loop

PDF | On Jun 23, 2015, Jasper M de Goeij and others published 2013 deGoeij Science Sponge loop | Find, read and cite all the research you need on ResearchGate

www.researchgate.net

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Coral-excavating sponges are the most important bioeroders on Caribbean reefs and increase in abundance throughout the region. This increase is commonly attributed to a concomitant increase in food availability due to eutrophication and pollution. We ...

www.ncbi.nlm.nih.gov

The Role of Marine Sponges in Carbon and Nitrogen Cycles of COral Reefs and Nearshore Environments.

The role of marine sponges in carbon and nitrogen cycles of coral reef and nearshore environments - ProQuest

Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.

search.proquest.com

And since we're discussing favorable and not so favorable bacteria here's a paper looking at how different corals and polyps are influencing the bacteria in the water column.
Aura-biomes are present in the water layer above coral reef benthic macro-organisms

Aura-biomes are present in the water layer above coral reef benthic macro-organisms - PubMed

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in...

www.ncbi.nlm.nih.gov

Phosphorus and nitrogen stuff

An experimental mesocosm for long-term studies of reef corals | Journal of the Marine Biological Association of the United Kingdom | Cambridge Core

An experimental mesocosm for long-term studies of reef corals - Volume 92 Issue 4

www.cambridge.org

An Experimental Mesocosm for Longterm Studies of Reef Corals

Phosphate Deficiency:
Nutrient enrichment can increase the susceptibility of reef corals to bleaching:

Nutrient enrichment can increase the susceptibility of reef corals to bleaching - Nature Climate Change

Increased dissolved inorganic nitrogen (DIN) concentrations in sea water have been linked to a reduction of the temperature threshold at which corals bleach, however, the mechanism underlying this change is not known. This phenomenon is now explained in terms of increased phosphatase activities...

www.nature.com

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont:

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont

Reef building corals associated with symbiotic algae (zooxanthellae) can access environmental nutrients from different sources, most significantly via the uptake of dissolved inorganic nutrients by the algal symbiont and heterotrophic feeding of the coral host. Climate change is expected to...

www.frontiersin.org

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Enrichment of reef environments with dissolved inorganic nutrients is considered a major threat to the survival of corals living in symbiosis with din…

www.sciencedirect.com

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Phosphate contamination can negatively affect corals, modifying growth rates, skeletal density, reproduction, mortality, and zooxanthellae. We determi…

www.sciencedirect.com

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

SUMMARYSeveral untested aspects of the regulation of inorganic nutrient uptake were examined using nutrient depletion experiments with the symbiotic coral Stylophora pistillata. The total inhibition of phosphate uptake in artificial seawater lacking sodium indicates the involvement of a...

jeb.biologists.org

Phosphorus metabolism of reef organisms with algal symbionts

https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecm.1217?casa_token=ziDzrEEJ8g0AAAAA%3AHnfuGTIntMdqOtx2ij-lnoTh7qVg8VBhYFz98e60zfBEvx5IcIVGhmlpUYmzIJuqUNVm0sG8_0vth6lq

2657円まるいち博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

2657円まるいち博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

therichross.com

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Fig 4 from "Phosphorus metabolism of reef organisms with algal symbionts"

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals: Ingenta Connect

www.ingentaconnect.com

Amino acids a source of nitrogen for corals

Uptake of dissolved free amino acids by the scleractinian coral Stylophora pistillata

SUMMARY. This study was designed to assess the importance of dissolved free amino acids (DFAA) as a nitrogen source for the scleractinian coral Stylophora pistillata. For this purpose, experiments were performed using 15N-enriched DFAAs, and %15N enrichment was measured both in animal tissue and...

journals.biologists.com

Urea a source of nitrogen for corals

Urea uptake by the scleractinian coral Stylophora pistillata

Urea can be one of the major sources of nitrogen for phytoplankton, but little is known about its importance for corals. Experiments were therefore de…

www.sciencedirect.com

Diazotrpophs a source of nitrogen for corals

Diazotrophs: a non-negligible source of nitrogen for the tropical coral Stylophora pistillata - PubMed

Corals are mixotrophs: they are able to fix inorganic carbon through the activity of their symbiotic dinoflagellates and to gain nitrogen from predation on plankton and uptake of dissolved organic and inorganic nutrients. They also live in close association with diverse diazotrophic communities...

pubmed.ncbi.nlm.nih.gov

Context Dependant Effects of Nutrient Loading on the Coral-Algal Mutualism

Context-dependent effects of nutrient loading on the coral-algal mutualism | Request PDF

Request PDF | Context-dependent effects of nutrient loading on the coral-algal mutualism | Human-mediated increases in nutrient availability alter patterns of primary production, impact species diversity, and threaten ecosystem function.... | Find, read and cite all the research you need on...

www.researchgate.net

Fig 3 from COntext Dependant Effects

Feldman's research on aquarium stuff

Granular Activated Carbon Pt 1

Granular Activated Carbon, Part 1: Modeling of Operational Parameters for Dissolved Organic Carbon Removal from Marine Aquaria

Chemistry Department, The Pennsylvania State University. In this first part of a two part series, the authors will introduce granular activated carbon and explain the experimental goals and mathematical models used in their research.

www.advancedaquarist.com

Granular Activated Carbon Pt 2

Granular Activated Carbon, Part 2: Modeling of Operational Parameters for Dissolved Organic Carbon Removal from Marine Aquaria

Chemistry Department, The Pennsylvania State University. In Part 2, the authors will discuss the results of their research and make some recommendations to the aquarist on its usage.

www.advancedaquarist.com

Total Organic Carbon Pt 1

Total Organic Carbon (TOC) and the Reef Aquarium: an Initial Survey, Part I

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Ken and Kelly report on their work on Total Organic Carbon and how it relates to the reef aquarium.

www.advancedaquarist.com

Total Organic Carbon Pt 2

Total Organic Carbon (TOC) and the Reef Aquarium: an Initial Survey, Part II

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Ken and Kelly continue to report on their work on Total Organic Carbon and how it relates to the reef aquarium.

www.advancedaquarist.com

Protein Skimmer Performance, Pt 1

The Development of a Method for the Quantitative Evaluation of Protein Skimmer Performance

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Protein skimmers have become indispensable for many aquarists who strive to maintain the high water quality necessary to keep stony corals.

reefs.com

Protein Skimmer Performance, Pt 2

Further Studies on Protein Skimmer Performance

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Many factors contribute to the 'value' of a skimmer to an aquarist, including quality of construction, size, footprint, noise level, ease of cleaning, energy efficiency of the pump, and of course, the ability...

reefs.com

Elemental Analysis of Skimmate

Elemental Analysis of Skimmate: What Does a Protein Skimmer Actually Remove from Aquarium Water?

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. The chemical/elemental composition of skimmate generated by an H&S 200-1260 skimmer on a 175-gallon reef tank over the course of several days or a week had some surprises.

reefs.com

Bacterial Counts in Reef Aquarium Water

Bacterial Counts in Reef Aquarium Water: Baseline Values and Modulation by Carbon Dosing, Protein Skimming, and Granular Activated Carbon Filtration

What are the bacteria populations in the water column of reef tanks, and how does that value compare with bacterial counts in authentic reef water? Does carbon dosing indeed increase water column bacteria populations (i.e., is growth carbon limited)? Does mechanical filtration (protein skimming...

reefs.com

I see you support my comment that there is not 'one book' - and I agree with you - KISS - is the best method - I'm going to have to save this post - because you put up a lot of fantastic references!!!!!! Thanks

MnFish1 · May 16, 2022

BTW if I had to pick one - it would be coral in the microbial seas

monicalooze · May 17, 2022

Timfish said:
To save you time here's the list YinG Yang refferenced with a few additional links. Some are in hte refferences in Rohwer's book and some are newer and some are for sponges by other researchers than De Goiej which ROhwer doesn't touch on much except reffereing to "filter feeders" I know all this is overwhelming. Keep in mind it's been collected over 10+ years. Also I'd point the maintenence I do on systems I've been taking care of up to 27 years is just basic water changes and watch alkalinity, calcium, magnesium, PO4 and nitrate. Or in a simpler term KISS!

"Coral Reefs in the Microbial Seas" This video compliments Rohwer's book of the same title (Paper back is ~$20, Kindle is ~$10), both deal with the conflicting roles of the different types of DOC in reef ecosystems. While there is overlap bewteen his book and the video both have information not covered by the other and together give a broader view of the complex relationships found in reef ecosystems

Changing Seas - Mysterious Microbes

Nitrogen cycling in hte coral holobiont

BActeria and Sponges

Maintenance of Coral Reef Health (refferences at the end)

Optical Feedback Loop in Colorful Coral Bleaching

Richard Ross What's up with phosphate"

FYI: DOC can be roughly seperated into three catagories, Labile, Semirefractory and Refractory. Most of the following papaers are looking mainly at Labile DOC. This will raise the hackles on some reefers but keep in mind Labile DOC and Carbon Dosing are synonamous. Jasper deGeoij's work shows cryptic sponges remove labile DOC about a thousand times faster than bacterioplankton. Included are links to some of the research showing what cryptic sponges are doing as well. Also, researchers tend to use DOM (Dissolved Organic Matter) and DOC (Dissolved Organic Carbon) interchangebly.

long-term stony coral survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia with an ATS was measured in days, not years. (See figure 3) (This page may have been removed, I can send you a copy of the .PDF if you're interested)

Something went wrong | Royal Burgers' Zoo

www.burgerszoo.com

Indirect effects of algae on coral: algae‐mediated, microbe‐induced coral mortality

Error - Cookies Turned Off

onlinelibrary.wiley.com

Influence of coral and algal exudates on microbially mediated reef metabolism.
Coral DOC improves oxygen (autotrophy), algae DOC reduces oxygen (heterotrophy).

Influence of coral and algal exudates on microbially mediated reef metabolism

Benthic primary producers in tropical reef ecosystems can alter biogeochemical cycling and microbial processes in the surrounding seawater. In order to quantify these influences, we measured rates of photosynthesis, respiration, and dissolved organic carbon (DOC) exudate release by the dominant...

peerj.com

Role of elevated organic carbon levels and microbial activity in coral mortality

http://www.int-res.com/articles/meps2006/314/m314p119.pdf

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity
Algae releases significantly more DOC into the water than coral.

Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in...

journals.plos.org

Pathologies and mortality rates caused by organic carbon and nutrient stressors in three Caribbean coral species.
Starch and sugars (doc) caused coral death but not high nitrates, phosphates or ammonium.

http://www.int-res.com/articles/meps2005/294/m294p173.pdf

Visualization of oxygen distribution patterns caused by coral and algae

Visualization of oxygen distribution patterns caused by coral and algae

Planar optodes were used to visualize oxygen distribution patterns associated with a coral reef associated green algae (Chaetomorpha sp.) and a hermatypic coral (Favia sp.) separately, as standalone organisms, and placed in close proximity mimicking coral-algal interactions. Oxygen patterns were...

peerj.com

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates
Exposure to exudates derived from turf algae stimulated higher oxygen drawdown by the coral-associated bacteria.

Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

Algae-derived dissolved organic matter has been hypothesized to induce mortality of reef building corals. One proposed killing mechanism is a zone of hypoxia created by rapidly growing microbes. To investigate this hypothesis, biological oxygen demand ...

www.ncbi.nlm.nih.gov

Microbial ecology: Algae feed a shift on coral reefs

Microbial ecology: Algae feed a shift on coral reefs - Nature Microbiology

Human pressures on coral reefs are giving macroalgae a competitive advantage over reef-building corals. These algae support larger, and potentially pathogenic, microbial populations that are metabolically primed for less-efficient, yet faster, carbohydrate remineralization, perpetuating a...

www.nature.com

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages - PubMed

Increasing algal cover on tropical reefs worldwide may be maintained through feedbacks whereby algae outcompete coral by altering microbial activity. We hypothesized that algae and coral release compositionally distinct exudates that differentially alter bacterioplankton growth and community...

www.ncbi.nlm.nih.gov

Sugar enrichment provides evidence for a role of nitrogen fixation in coral bleaching

Error - Cookies Turned Off

onlinelibrary.wiley.com

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution
(here's an argument for maintaining heavy fish loads if you're carbon dosing)

Elevated ammonium delays the impairment of the coral-dinoflagellate symbiosis during labile carbon pollution

Labile dissolved organic carbon (DOC) is a major pollutant in coastal marine environments affected by anthropogenic impacts, and may significantly con…

www.sciencedirect.com

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton

Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton - The ISME Journal

Coastal pollution and algal cover are increasing on many coral reefs, resulting in higher dissolved organic carbon (DOC) concentrations. High DOC concentrations strongly affect microbial activity in reef waters and select for copiotrophic, often potentially virulent microbial populations. High...

www.nature.com

Unseen players shape benthic competition on coral reefs.

Unseen players shape benthic competition on coral reefs - PubMed

Recent work has shown that hydrophilic and hydrophobic organic matter (OM) from algae disrupts the function of the coral holobiont and promotes the invasion of opportunistic pathogens, leading to coral morbidity and mortality. Here we refer to these dynamics as the (3)DAM [dissolved organic...

www.ncbi.nlm.nih.gov

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance.

Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance - PubMed

Diverse microbial communities associate with coral tissues and mucus, providing important protective and nutritional services, but once disturbed, the microbial equilibrium may shift from a beneficial state to one that is detrimental or pathogenic. Macroalgae (e.g., seaweeds) can physically and...

www.ncbi.nlm.nih.gov

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides.

Macroalgae decrease growth and alter microbial community structure of the reef-building coral, Porites astreoides - PubMed

With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the...

www.ncbi.nlm.nih.gov

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals.

Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals - PubMed

Benthic macroalgae can be abundant on present-day coral reefs, especially where rates of herbivory are low and/or dissolved nutrients are high. This study investigated the impact of macroalgal extracts on both coral-associated bacterial assemblages and sublethal stress response of corals. Crude...

www.ncbi.nlm.nih.gov

Biophysical and physiological processes causing oxygen loss from coral reefs.

https://elifesciences.org/articles/49114.pdf

Global microbialization of coral reefs
DDAM Proven

Global microbialization of coral reefs - Nature Microbiology

Analysis of 60 sites in three ocean basins suggests that overgrowth of fleshy algae on coral reefs supports higher microbial abundances dominated by copiotrophic, potentially pathogenic bacteria via the provision of dissolved inorganic carbon.

www.nature.com

Coral Reef Microorganisms in a Changing Climate, Fig 3

Coral Reef Microorganisms in a Changing Climate

Coral reefs are one of the most diverse and productive ecosystems on the planet, yet they have suffered tremendous losses due to anthropogenic disturbances and are predicted to be one of the most adversely affected habitats under future climate change ...

www.ncbi.nlm.nih.gov

Ecosystem Microbiology of Coral Reefs: Linking Genomic, Metabolomic, and Biogeochemical Dynamics from Animal Symbioses to Reefscape Processes

https://msystems.asm.org/content/msys/3/2/e00162-17.full.pdf

Because sponges are essential players in the carbon, nitrogen and phosphorus cycle(s) on reefs here's some links to research done with them.

Element cycling on tropical coral reefs.
This is Jasper de Geoij's ground breaking research on reef sponge finding some species process labile DOC 1000X faster than bacterioplankton. (The introduction is in Dutch but the content is in English.)

https://www.rug.nl/research/portal/files/14555035/13completethesis.pdf

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Differential recycling of coral and algal dissolved organic matter via the sponge loop.
Sponges treat DOC from algae differently than DOC from corals

Error - Cookies Turned Off

besjournals.onlinelibrary.wiley.com

A Vicious Circle? Altered Carbon and Nutrient Cycling May Explain the Low Resilience of Caribbean Coral Reefs

A Vicious Circle? Altered Carbon and Nutrient Cycling May Explain the Low Resilience of Caribbean Coral Reefs

Coral reefs are economically important ecosystems that have suffered unprecedented losses of corals in the recent past. Why have Caribbean reefs in particu

academic.oup.com

Surviving in a Marine Desert The Sponge Loop Retains Resources Within Coral Reefs
Dissolved organic carbon and nitrogen are quickly processed by sponges and released back into the reef food web in hours as carbon and nitrogen rich detritus.

(PDF) 2013 deGoeij Science Sponge loop

PDF | On Jun 23, 2015, Jasper M de Goeij and others published 2013 deGoeij Science Sponge loop | Find, read and cite all the research you need on ResearchGate

www.researchgate.net

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC)

Coral-excavating sponges are the most important bioeroders on Caribbean reefs and increase in abundance throughout the region. This increase is commonly attributed to a concomitant increase in food availability due to eutrophication and pollution. We ...

www.ncbi.nlm.nih.gov

The Role of Marine Sponges in Carbon and Nitrogen Cycles of COral Reefs and Nearshore Environments.

The role of marine sponges in carbon and nitrogen cycles of coral reef and nearshore environments - ProQuest

Explore millions of resources from scholarly journals, books, newspapers, videos and more, on the ProQuest Platform.

search.proquest.com

And since we're discussing favorable and not so favorable bacteria here's a paper looking at how different corals and polyps are influencing the bacteria in the water column.
Aura-biomes are present in the water layer above coral reef benthic macro-organisms

Aura-biomes are present in the water layer above coral reef benthic macro-organisms - PubMed

As coral reef habitats decline worldwide, some reefs are transitioning from coral- to algal-dominated benthos with the exact cause for this shift remaining elusive. Increases in the abundance of microbes in the water column has been correlated with an increase in coral disease and reduction in...

www.ncbi.nlm.nih.gov

Phosphorus and nitrogen stuff

An experimental mesocosm for long-term studies of reef corals | Journal of the Marine Biological Association of the United Kingdom | Cambridge Core

An experimental mesocosm for long-term studies of reef corals - Volume 92 Issue 4

www.cambridge.org

An Experimental Mesocosm for Longterm Studies of Reef Corals

Phosphate Deficiency:
Nutrient enrichment can increase the susceptibility of reef corals to bleaching:

Nutrient enrichment can increase the susceptibility of reef corals to bleaching - Nature Climate Change

Increased dissolved inorganic nitrogen (DIN) concentrations in sea water have been linked to a reduction of the temperature threshold at which corals bleach, however, the mechanism underlying this change is not known. This phenomenon is now explained in terms of increased phosphatase activities...

www.nature.com

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont:

Ultrastructural Biomarkers in Symbiotic Algae Reflect the Availability of Dissolved Inorganic Nutrients and Particulate Food to the Reef Coral Holobiont

Reef building corals associated with symbiotic algae (zooxanthellae) can access environmental nutrients from different sources, most significantly via the uptake of dissolved inorganic nutrients by the algal symbiont and heterotrophic feeding of the coral host. Climate change is expected to...

www.frontiersin.org

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Enrichment of reef environments with dissolved inorganic nutrients is considered a major threat to the survival of corals living in symbiosis with din…

www.sciencedirect.com

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Effects of phosphate on growth and skeletal density in the scleractinian coral Acropora muricata: A controlled experimental approach

Phosphate contamination can negatively affect corals, modifying growth rates, skeletal density, reproduction, mortality, and zooxanthellae. We determi…

www.sciencedirect.com

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

High phosphate uptake requirements of the scleractinian coral Stylophora pistillata

SUMMARYSeveral untested aspects of the regulation of inorganic nutrient uptake were examined using nutrient depletion experiments with the symbiotic coral Stylophora pistillata. The total inhibition of phosphate uptake in artificial seawater lacking sodium indicates the involvement of a...

jeb.biologists.org

Phosphorus metabolism of reef organisms with algal symbionts

https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecm.1217?casa_token=ziDzrEEJ8g0AAAAA%3AHnfuGTIntMdqOtx2ij-lnoTh7qVg8VBhYFz98e60zfBEvx5IcIVGhmlpUYmzIJuqUNVm0sG8_0vth6lq

2657円まるいち博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

2657円まるいち博多辛子明太子(無着色) 「博多の華」 (ギフト用) 180g Z6572海産物イクラ,タラコ,魚卵 Qoo10]　「博　まるいち　博多辛子明太子(無着色) | therichross.com

therichross.com

Sponge symbionts and the marine P cycle

Sponge symbionts and the marine P cycle

Marine sponges are ubiquitous colonizers of shallow, clear-water environments in the oceans (1, 2). Sponges have emerged as significant mediators of biogeochemical fluxes in coastal zones by virtue of respiring organic matter and facilitating both the consumption and release of nutrients (3, 4)...

www.pnas.org

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges

Coral reefs are highly productive ecosystems that raise a conundrum called “Darwin’s paradox”: How can high production flourish in low-nutrient conditions? We show here that in three abundant Caribbean sponges, the granules that have been commonly observed in sponge tissue for decades are...

www.pnas.org

Fig 4 from "Phosphorus metabolism of reef organisms with algal symbionts"

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals

Ammonium Uptake by Symbiotic and Aposymbiotic Reef Corals: Ingenta Connect

www.ingentaconnect.com

Amino acids a source of nitrogen for corals

Uptake of dissolved free amino acids by the scleractinian coral Stylophora pistillata

SUMMARY. This study was designed to assess the importance of dissolved free amino acids (DFAA) as a nitrogen source for the scleractinian coral Stylophora pistillata. For this purpose, experiments were performed using 15N-enriched DFAAs, and %15N enrichment was measured both in animal tissue and...

journals.biologists.com

Urea a source of nitrogen for corals

Urea uptake by the scleractinian coral Stylophora pistillata

Urea can be one of the major sources of nitrogen for phytoplankton, but little is known about its importance for corals. Experiments were therefore de…

www.sciencedirect.com

Diazotrpophs a source of nitrogen for corals

Diazotrophs: a non-negligible source of nitrogen for the tropical coral Stylophora pistillata - PubMed

Corals are mixotrophs: they are able to fix inorganic carbon through the activity of their symbiotic dinoflagellates and to gain nitrogen from predation on plankton and uptake of dissolved organic and inorganic nutrients. They also live in close association with diverse diazotrophic communities...

pubmed.ncbi.nlm.nih.gov

Context Dependant Effects of Nutrient Loading on the Coral-Algal Mutualism

Context-dependent effects of nutrient loading on the coral-algal mutualism | Request PDF

Request PDF | Context-dependent effects of nutrient loading on the coral-algal mutualism | Human-mediated increases in nutrient availability alter patterns of primary production, impact species diversity, and threaten ecosystem function.... | Find, read and cite all the research you need on...

www.researchgate.net

Fig 3 from COntext Dependant Effects

Feldman's research on aquarium stuff

Granular Activated Carbon Pt 1

Granular Activated Carbon, Part 1: Modeling of Operational Parameters for Dissolved Organic Carbon Removal from Marine Aquaria

Chemistry Department, The Pennsylvania State University. In this first part of a two part series, the authors will introduce granular activated carbon and explain the experimental goals and mathematical models used in their research.

www.advancedaquarist.com

Granular Activated Carbon Pt 2

Granular Activated Carbon, Part 2: Modeling of Operational Parameters for Dissolved Organic Carbon Removal from Marine Aquaria

Chemistry Department, The Pennsylvania State University. In Part 2, the authors will discuss the results of their research and make some recommendations to the aquarist on its usage.

www.advancedaquarist.com

Total Organic Carbon Pt 1

Total Organic Carbon (TOC) and the Reef Aquarium: an Initial Survey, Part I

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Ken and Kelly report on their work on Total Organic Carbon and how it relates to the reef aquarium.

www.advancedaquarist.com

Total Organic Carbon Pt 2

Total Organic Carbon (TOC) and the Reef Aquarium: an Initial Survey, Part II

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Ken and Kelly continue to report on their work on Total Organic Carbon and how it relates to the reef aquarium.

www.advancedaquarist.com

Protein Skimmer Performance, Pt 1

The Development of a Method for the Quantitative Evaluation of Protein Skimmer Performance

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Protein skimmers have become indispensable for many aquarists who strive to maintain the high water quality necessary to keep stony corals.

reefs.com

Protein Skimmer Performance, Pt 2

Further Studies on Protein Skimmer Performance

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. Many factors contribute to the 'value' of a skimmer to an aquarist, including quality of construction, size, footprint, noise level, ease of cleaning, energy efficiency of the pump, and of course, the ability...

reefs.com

Elemental Analysis of Skimmate

Elemental Analysis of Skimmate: What Does a Protein Skimmer Actually Remove from Aquarium Water?

Department of Chemistry, The Pennsylvania State University, University Park, PA 16802. The chemical/elemental composition of skimmate generated by an H&S 200-1260 skimmer on a 175-gallon reef tank over the course of several days or a week had some surprises.

reefs.com

Bacterial Counts in Reef Aquarium Water

Bacterial Counts in Reef Aquarium Water: Baseline Values and Modulation by Carbon Dosing, Protein Skimming, and Granular Activated Carbon Filtration

What are the bacteria populations in the water column of reef tanks, and how does that value compare with bacterial counts in authentic reef water? Does carbon dosing indeed increase water column bacteria populations (i.e., is growth carbon limited)? Does mechanical filtration (protein skimming...

reefs.com

This is SO helpful! I'm sure this took you a while to compile. I will also be saving it!

I will look at these and see if I still need a foundational text for a refresher, since it's been so many years since I took any ecology/biology/zoology classes. I never took a marine bio class either.

I ALSO believe in the KISS method, but I started an NPS tank, so I need to figure out what my KISS method will be for that tank, and to do that, I believe these resources will be helpful. Trying to feed sessile inverts and NPS corals without fully understanding the food web, carbon, organics, inorganics, and the microbial loop is irresponsible.

Timfish · May 17, 2022

monicalooze said:
This is SO helpful! I'm sure this took you a while to compile. I will also be saving it! . . . Trying to feed sessile inverts and NPS corals without fully understanding the food web, carbon, organics, inorganics, and the microbial loop is irresponsible.

I would add "trying to"

"without 'trying to' fully understanding the food web, carbon, organics, inorganics, and the microbial loop is irresponsible"

We still don't know a great deal about all that stuff. :/

There's also this stuff on feeding photosynthetic corals I forgot to add. While none of it was done on non-photosynthetic species, species specific response should still be expected IMO.

(PDF) Coral farming: Effects of light, water motion and artificial foods

PDF | Improved coral cultivation will facilitate the reduction of wild harvesting, reef restoration, preservation of biodiversity, and the use of corals... | Find, read and cite all the research you need on ResearchGate

www.researchgate.net

Elucidating an optimal diet for captive Acropora corals

Developing an optimal heterotrophic feeding regime has the potential to improve the growth and overall health of captive corals. This study evaluated …

www.sciencedirect.com

Comparing the capacity of five different dietary treatments to optimise growth and nutritional composition in two scleractinian corals

Developing an optimal heterotrophic feeding regime has the potential to improve captive coral growth and health. This study evaluated the efficacy of three exogenous diets: Artemia nauplii (ART), a commercially available coral diet (Reef Roids) (RR), and a novel, micro-bound diet (ATF), against...

journals.plos.org

Effect of natural zooplankton feeding on the tissue and skeletal growth of the scleractinian coral Stylophora pistillata - Coral Reefs

Laboratory experiments were designed to estimate the ingestion rates of the scleractinian coral Stylophora pistillata under varying prey concentrations and feeding regimes and to assess the effect of feeding on the tissue and skeletal growth. Six sets of corals were incubated under two light (80...

link.springer.com