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I considered this oneIn addition to Oceana, which was mentioned above, I'm a big fan of Coral Reef Alliance.
Coral Reef Alliance | Saving the World’s Coral Reefs
Mote Marine Laboratory! They have a coral restoration lab in the keys.
Great organization to learn about Coral Restoration, especially if you are a scuba diver! Learned much from them over the past three years and was the inspiration for getting into aquaria!I like the Coral Restoration Foundation out of Florida. They do a lot of work restoring reefs, providing education, etc. They can be found here! https://www.coralrestoration.org/
Though not reef specific, I'm surprised nobody has mentioned The Ocean Cleanup
https://theoceancleanup.com/