One more, would you use the bulkhead to squeeze the silcon? Or use something heavy, let it cure, then apply bulkhead?
I’ve slept on this question and given it more thought…
— my initial recommendation to press the glass plate into place to push out all bubbles still ring true, at least partially…
— My initial concern with using the bulkhead to clamp the new glass plate down was that the excessive silicone will squeeze out into the bulkhead hole; effectively gluing the bulkhead in place!
However, now I propose a hybrid solution of manually pressing the glass plate down to start, and finishing by clamping with the bulkhead fitting!
Here’s how/why:
If you press the new glass plate down onto the bottom of the tank only by hand, then let it sit and cure; the silicone is so viscous that the new glass plate isn’t guaranteed to be sitting perfectly parallel with the bottom pane of the tank itself! — this could cause bulkhead gasket issues, and glass stress issues (clamping a flat bulkhead seal on a slightly slanted surface)…
— so, why not remove the rubber gasket from the bulkhead fitting, then either masking tape the bottom of the bulkhead flange and threads, or use petroleum jelly on them as a “mold release”?
— this allows you to press the bubbles out of the new glass plate’s silicone bond by hand, wipe off the excess silicone that’s squished out into the bulkhead hole, then install/tighten the masked (or mold release coated) bulkhead to ensure the new glass plate is nice and parallel to the existing tank bottom before the silicone skins over!
Then, come back the next day, or next week to remove the bulkhead and proceed with plumbing!