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IMHO the answer is yes and no. They both help remove nitrate and phosphate from your water. That's what we all want.
The algae scrubber takes up less room and maybe requires a bit more maintenance... maybe. And if room is at a premium, that's a big deal in favor of a scrubber.
A refugium can house other things along with macro algae, like live rock, marine blocks, copepods, other inverts, other filtration. They can also allow for more drainage from the DT if the power or return pump ever fail. I also keep a few new corals on a small rack in the fuge until I find time to make room for them in my DT.
My fuge is where my filter sock is. I have a mix of macro algae. There are 2 urchins and 2 emerald crabs as well. Oh, and a few weeks ago I found a small frag of a bright green leather coral growing on the bottom when I was harvesting algae.
I had the same problem when I first set mine up and was running them 24/7. My nutrients dropped to zero corals lost color and my cheeto died. I cut the lighting back to 8 hours and nutrients climbed back up. By regulating my ATSs light schedule I can control my nutrient levels to where I want them to be.I ran an algae scrubber for about 6 months. It cleaned my water to the point it was to clean. I didn’t know that was a thing. My coral all started to look bad, couldn’t find the problem at first. So I started testing and asking questions. My nitrates where zero to 1 my phosphates where almost 0. Then I shut it off for about a month. Everything started looking better and better. Now my algae scrubber is in a box in my garage. So personally I will never run one again.
I ran an algae scrubber for about 6 months. It cleaned my water to the point it was to clean. I didn’t know that was a thing. My coral all started to look bad, couldn’t find the problem at first. So I started testing and asking questions. My nitrates where zero to 1 my phosphates where almost 0. Then I shut it off for about a month. Everything started looking better and better. Now my algae scrubber is in a box in my garage. So personally I will never run one again.