Does the baking process convert some of the bicarbonate to carbonate?It is certainly fine to dose bicarbonate. That is why my recipes article makes this recommendation:
Comparing the Two Primary Recipes
This article actually details two primary recipes. One uses raw baking soda, and the other uses baking soda that aquarists bake before use. The baking drives some of the carbon dioxide out of the baking soda, and raises its pH as well as its alkalinity. Be careful about substituting other brands for the Dowflake and the magnesium chloride sold by the Dead Sea Works company. A later section in this article details substitution issues.
Recipe #1 is for use in reef aquaria whose pH is normal to low. In practice, more reef aquarists end up choosing this recipe than Recipe #2. It will tend to raise pH due to its alkalinity part's elevated pH, as do most of the commercial two-part additives. The increase in pH depends on the aquarium's alkalinity and, of course, on how much is added. Adding on the order of 0.5 meq/L of alkalinity increases the pH by about 0.3 pH units immediately upon its addition (and even higher, locally, before it has a chance to mix throughout the aquarium).
If you are using limewater (kalkwasser) and the aquarium is at pH 8.4 or above, this recipe is not the best choice. Otherwise, it is likely to be a good option. It is twice as concentrated as Recipe #2, because the baking process makes the baking soda more soluble.
Recipe #2 is for use in reef aquaria whose pH is on the high side (above 8.3 or so). It will have a very small pH lowering effect when initially added. The pH drop achieved will depend on the aquarium's alkalinity and, of course, on how much is added. Adding on the order of 0.5 meq/L of alkalinity drops the pH by about 0.04 pH units immediately upon its addition.
If you are using limewater (kalkwasser) and the aquarium is at pH 8.4 or above, this recipe may be the best choice. It is half as concentrated as Recipe #1 because the raw baking soda is less soluble because it's unbaked.