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It is ultimately immunity which makes this work - but immunity waxes and wanes - it is also a mature tank with a matrix of ciliate predators, sufficient dilution through good filtration and flow which makes mature tanks resistant to sudden blooms sufficient to prove lethal to its residents as it is the sudden bloom that kills.
Its a myth that you have to eliminate ich and velvet from your systems or all you fish will suffer and die and its based on misapplication of the data from very good studies. What this leads to is to cumbersome husbandry practices, sub-optimal treatment of fish and frustration on the part of hobbyists.
We have adopted the practice of seeding tanks with bacteria as part of the cycle. Could we not do the same for the benthic predators of some of our most commonly encountered ciliate parasites? I don't think its far fetched. Thank god for bats!
Which immunity waxes and wanes?
If your fish is immune - you don't have to eliminate velvet or CI from your tank - but if you are adding fish that are not immune - you might have a problem or? IMHO - you can be successful with a QT'd tank (just like Bill Gates is trying to eliminate Malaria) or The WHO is trying to eliminate small pox. They are not introducing parasites, etc into communities to build immunity. Likewise - you can have a successful tank without QT - IMHO you need to use low stocking density and some method of filtration/sterilization (the key being a low stocking density) and high flow.
The filtration part (and the Brine Shrimp part) is interesting - though 'brine shrimp' alone may not be able to eliminate Velvet except in a QT type situation - I think the more 'filter feeders' clams, small inverts, coral - the less likely you will have problems with CI/Velvet. Again - just theory - but backed by several articles - including the one posted by the OP.