As long as you've found settings that you like and you can leave them alone, you need to focus on other areas if you have coral issues.
How old is this system?
How long have you been growing corals in it?
Are stony corals a more recent addition? (Vs. anomones, mushrooms, polyps, etc)
Can you post your most recent complete set of test results?
Instability in alkalinity and depravation of N or P can all cause problems, just to name some more popular things to consider for "blame". ;)
A picture of one of the suffering corals compared to a pic of a one that's doing well may help too.