I'm glad you brought up the live sand and rock absorbing phosphates and releasing them because I noticed in some parts on my tank, I'm finding craters in the sand. I think the flow is moving the sand bed. I can't control the circulation pump but I did turn down the hob filter to see if that helps. I wonder if that has something to do with the rising numbers in just a couple days since you're not supposed to move the sand much.
As far as the hanna checkers, here is what I do.
1) Fill cuvetts to 10ml (at line)
2) Get my packets and checkers ready to use and keep separated
3) Turn on the checker and wait for C1.
4) I use an eye cleaning glass cloth to wipe off all finger prints
5) Place the cuvetts in the checkers ( I started placing them in the same direction as they went in after someone suggested I try this), press button until it shows C2
6) Remove cuvetts and open packets to fill them with the correct packages
7) Use my phone for a 2 minute timer (actual countdown function) and shake continuously
8) Clean off finger prints and place in the checkers, holding button until countdown number shows
9) Wait patiently for test results
10) I rinse out 3x and leave rodi water in them now