Thats kind of what im getting at. Skimming to add something back either nitrate or phosphate seems counterintuitive to me.
Ive been trying to think of the best way around that.
In my opinion, there isn't a good way around it. It is hard to balance nitrogen and phosphate in a system without some reefer management because the foods we feed are not balanced. It is high in phosphate... either because extra phosphate is added as a preservative or because ingredients aren't of great quality.
When I use the skimmer enough to keep the phosphate in check, the nitrate drops to zero very quickly no matter how heavily I feed. I add ammonia to make sure the organisms are getting enough nitrogen as evidenced by a nitrate reading above zero.
Ammonia is cheap, safe, and easy to dose. You can make your own solution and dose it by hand. You need to understand how, but there is plenty of info about it here at R2R.