Yea, I was cursing those doors, I don't know how many calls to them I had....I tried adjusting the feet but that just threw the doors out of wack further.
In the end what worked for me:
1. Shim/level without water
2. Fill with water
3. Shim/level with water
4. Adjusted doors
The doors where out of level and actually got better after steps 1-3.