Hey reefers,
I need help with an algae/bacteria ID. I’m at my wit’s end- nothing seems to match 100%.
TL;DR: 664 gallon inter-plumbed trough system in retail setting. Bubbly/turfy green/brown eyesore appeared about the same time as nutrients bottoming out a few months ago. Stabilizing chems, turning off white/red spectrums, and adding a UV did not help. Remains over night but does seem to get worse during the day. Black outs are not an option. Photos, videos, and chem log attached.
Background:
This is a very old and established 664 gallon trough system in a retail store for selling coral. Filtration includes filter socks into a refugium (no macro), bio-tower, UV (recent), and skimmer (offline). We removed macro and turned the skimmer off July ‘24 because the system was too clean- we got and cured dino’s more than once over the last few years prior to that. We dose seachem nitrogen, fusion 1, and fusion 2. Until recently we fed Fuel and phytoplankton (or reef roids) multiple times weekly. About 3ish months ago there was a malfunction with the dosing pumps and nutrients bottomed out in addition to calc/alk becoming unstable. Around that time we noticed a dino-like growth taking over one of the 3 inter-plumbed troughs. We corrected and stabilized chems as quickly as we could- there a lot of challenges with a revolving staff and frequent livestock change- but the algae persisted and started to spread to the other two troughs. We adjusted light spectrum to be nearly full blue, no white or red, and finally got a UV running 2 weeks ago but there has been no change. We scrub the egg crate/siphon into socks every day but it grows back extremely quickly and persists over night (though it does seem to get worse during the day). Dosing bacteria did not appear to have any effect.
Once we finally got a microscope in I took a look at a water sample using this method: https://www.reef2reef.com/threads/helpful-method-for-identifying-dinoflagellates.216508/
But nothing developed in the water as described there nor did I see anything with the microscope. I put samples of algae (included that which was scrubbed off, floating on surface, or yanked directly from surfaces) under the microscope and all that is attached is from those observations. I’ve also attached photos of the egg crate under white lights, as well as our chem logs from the last few months. The pic of the egg crate is first thing in the morning before the lights even came on- I turned them on for the photo.
My suspects include large cell amphidinium, lynbya, calothrix, or maybe some species of bryopsis- but none seem to fit all the characteristics, particularly the microscopy.
Keep in mind that black outs are not an option- we are open 7 days a week and don’t currently have an alternative system for the coral to be moved to. The lights must be on 10am-8pm. Please help me ID and treat!

I need help with an algae/bacteria ID. I’m at my wit’s end- nothing seems to match 100%.
TL;DR: 664 gallon inter-plumbed trough system in retail setting. Bubbly/turfy green/brown eyesore appeared about the same time as nutrients bottoming out a few months ago. Stabilizing chems, turning off white/red spectrums, and adding a UV did not help. Remains over night but does seem to get worse during the day. Black outs are not an option. Photos, videos, and chem log attached.
Background:
This is a very old and established 664 gallon trough system in a retail store for selling coral. Filtration includes filter socks into a refugium (no macro), bio-tower, UV (recent), and skimmer (offline). We removed macro and turned the skimmer off July ‘24 because the system was too clean- we got and cured dino’s more than once over the last few years prior to that. We dose seachem nitrogen, fusion 1, and fusion 2. Until recently we fed Fuel and phytoplankton (or reef roids) multiple times weekly. About 3ish months ago there was a malfunction with the dosing pumps and nutrients bottomed out in addition to calc/alk becoming unstable. Around that time we noticed a dino-like growth taking over one of the 3 inter-plumbed troughs. We corrected and stabilized chems as quickly as we could- there a lot of challenges with a revolving staff and frequent livestock change- but the algae persisted and started to spread to the other two troughs. We adjusted light spectrum to be nearly full blue, no white or red, and finally got a UV running 2 weeks ago but there has been no change. We scrub the egg crate/siphon into socks every day but it grows back extremely quickly and persists over night (though it does seem to get worse during the day). Dosing bacteria did not appear to have any effect.
Once we finally got a microscope in I took a look at a water sample using this method: https://www.reef2reef.com/threads/helpful-method-for-identifying-dinoflagellates.216508/
But nothing developed in the water as described there nor did I see anything with the microscope. I put samples of algae (included that which was scrubbed off, floating on surface, or yanked directly from surfaces) under the microscope and all that is attached is from those observations. I’ve also attached photos of the egg crate under white lights, as well as our chem logs from the last few months. The pic of the egg crate is first thing in the morning before the lights even came on- I turned them on for the photo.
My suspects include large cell amphidinium, lynbya, calothrix, or maybe some species of bryopsis- but none seem to fit all the characteristics, particularly the microscopy.
Keep in mind that black outs are not an option- we are open 7 days a week and don’t currently have an alternative system for the coral to be moved to. The lights must be on 10am-8pm. Please help me ID and treat!

