What makes you think the color changes are not a positive response to something? From what I can tell, BC aquatic man is not supposed to be green. I have seen some much more knowledgeable folks on here state that PE is not necessarily an indicator of health.
Personally, I think the parts that have changed look much better. If it's growing and the colors are desirable, why go down the rabbit hole?
My experience with SPS in this tank has been losing color is a prelude to something bad happening.