Just from personal experience using RO membranes for the past 30 years. I have never noticed any difference in longevity or output with clean source water. A properly sized restrictor will flush all the stuff that is blocked by the RO during it's operation. I replace the membrane when TDS is higher than I want and few points over a new filter or output has fallen, so maybe every 4 or 5 years. That's with flushing .. or when I flush once a month. I did have a situation using well water with silt. Even with 1micron prefiltering some got through it was so fine. I would flush every week or so and the initial flush water would look like mud for a few seconds.
If it makes you happy to flush then a few second flush at the end of each use won't hurt anything, just a waste of water IMO. As noted above since we are using DI post RO, a valve to divert the RO for the first quart or two will save a lot of DI resin since that first bit of RO water is high in TDS and flushing doesn't change that since it is on the 'good' side of the membrane and flushing is on the waste side.