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Hey there! Welcome to the community and welcome to the uglies. The diatoms will go away on their own once the excess silicates in your system have been used up. However, the quoted text above tells me that you aren't just dealing with diatoms, but as @Fish Fan suggested, dinos as-well.They will also disappear on the sand at night and then come back once the lights are back on.
So, in this case, the diatoms are your friend, because they are limiting the growth of the dinos. Do you have, or have access to a microscope? Microscopy will allow us to make a positive ID on the particular flavor, though I'm going to guess an amphidium sp. based on the above behavior.