Hole in torch skeleton

IIDRYWATERII

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Hi found a small home 5mm in a new frag… Noticed a couple of hermits picking at it over the corse of a week which has made it bigger…..
Looked inside the hole and found no hitch hikers so I’ve plugged it with reef putty to stop crabs picking at it ….
Have I done wrong plugging it in tank while still submerged or should I have removed and emptied the water out of the coral then plugged it dry, so there’s no trapped water ….
Maybe a stupid question still learning….
 

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