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My refugium is something like this - but I did not incorporate soil in my mix of the DSB in my refugium. However I have reverse flow through the sand bed of around 300 L/hour and I injected skimmate in the plenum below the sand bed when I started up. I inject around 24 ml 8% ethanol in the plenum every day. For the moment I add a water flow for 30 minutes each hour and if my redox is above 0 - I add ethanol. In this way I alter between aerob and anaerob environment. With other words - between reduction and oxidation.
See below ORP lower than 0 = reduction - higher than 0 = oxidation
My aquarium is a heavy loaded 300 L system and I can control my NO3 concentrations this way. I control - for the moment - my PO4 through GFO. My GFO reactor have an apartment with filter floss before the GFO in order to keep organic matter (and hence bacteria growth) away from the GFO. I have a skimmer. There is a lot of no photosynthesising but filtrating animals in my tank, sponges, yellow sun coral, small feather dusters (at places there my copper band can´t reach them) - even tunicates grow in some places. There are sediments ending up in some places - and I never clean it up. There is tones of cryptic zones in the display. I do not have Zostera (eelgrass) but I know one place there my friends have succeeded with this tricky plant in a DSB based system.
The aquarium is nearly 10 years old
If you want to use a bacteria driven system - you should maybe add a skimmer and use the skimmate in order to feed your filtrating organisms - there is no better place for bacteria growth than the skimmer cup! In order to fight one type of cyanobacteria mats I use marine snow (fine CaCO3 powder) that have been soaked in skimmate for half an hour. And my cyanobacteria mats slowly disappear.
Good luck with your experiment and keep on thinking outside the box - inside the box will always result in stagnation!
Sincerely Lasse