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Thought I would update this thread.
My cyano is looking much better. I'm still struggling to keep my nutrients up. Water my last tank it is a complete paradigm shift to be struggling to not have enough nutrients. I might be dosing phosphates and nitrates for a long time.
I'm thinking of adding a timer for my skimmer to only have it on for a certain length of time each day like 16 hours or so and try to get it dialed in.
Also, my baffles are absolutely packed with pineapple sponges, I've heard they're mostly beneficial and tend to die off and reach equilibrium. Unless someone has more information I'll probably plan on just leaving them. I also picked up a cobolt neotherm for heating since it looks like my aqueon had only been keeping the tank at 75-76 or so and it's getting older anyways.
I picked up a nice Chalice coral as well as some trumpets since my last update. Here's a full tank shot so far.
Looking good! I've been through a few waves of sponges. Mostly I just let them be and clean them out when I do a deep cleaning on the back chambers every 6 months or so, although I just cleaned my return and skimmer pumps a few days ago because the sponges were getting a bit too friendly with them. So really, unless they are getting into your equipment and clogging things up, I don't think there is really any harm in leaving them.