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It doesn't really have a routine. It is both photosynthetic and chemosynthetic so it will survive in light and/or nutrient rich conditions. What are your nitrate and phosphate levels?
With your close loop and mp40's I don't think it has to do with flow. It sounds like a nutrient issue to me.
I put a better light on my fuge were I keep the chaeto. Last night the t5 actually blew. :( so I ran to Wally world and snagged a clip on light until I can order an 18" t5. Hopefully once I get the fuge going in the right direction I'll be able to keep the chaeto out competing the other.
I agree with this. Try vacuuming it out of your sand bed and running a power head over your rocks to blow them off. If you go the chemi-clean route be sure to follow the directions to a "t" if you don't it can and will harm your corals. I'm speaking from experience.
If you have filter sock you need to put them in to catch all the crap you stir up blowing off the rock. Make sure to change it when the water clears.
You want need to use the filter sock all the time just to clean the water from time to time and that should help with your problems some.