That would be cool.
I have one of the old RW 10 models that died and was playing around with the controller and the power supply is 24v and from what I can tell the pwm control is 5v.
I was thinking that it wouldn't be to hard to use the pwm built into the rpi and declare the jacks to the pumps as lights. Then you might be able to have some control over the on and of functions and some ramping speed without any programing involved.
Additional programing would be needed in reef-pi to replicate the functionality of the Jebao built in wave modes and feed function.
Designing the actual circuit to add it to the rpi is beyond my knowledge but maybe there is a way to hijack their board and have reef-pi control it?
This would also be cool if we could figure out a way to use the Jebao wireless OW series pumps and have the rpi control the with wireless but that might be a bit of a stretch since their wireless capability is just to link the pumps not to control them remotely from a main controller.
A simple slow ramp up and down using the same control as a lighting schedule would be cool. That way you could run 2 pumps, one on each side of the tank and have them ramp up and down opposite of each other throughout the day and then have them both ramp down to say 20 or 30 percent after lights out.
Just some thoughts for those with more knowledge about circuit construction and programing.